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Jeffrey van Santen

Developer & Data Scientist

Linington Lab - Simon Fraser University

Biography

Jeff van Santen is a developer and data scientist in the Linington Lab at Simon Fraser University. We develop novel tools to facilitate natural products chemistry. He leads the Natural Products Atlas open-source database of microbial natural products.

Interests

  • Data Science
  • Open-Source Software
  • Data Processing and Management

Education

  • MSc in Computational Chemistry, 2017

    University of British Columbia

  • Hons BSc in Chemistry, 2015

    University of British Columbia

Skills

Python

Databases

Statistics

Linux

Javascript

Science

Experience

 
 
 
 
 

Data Scientist / Developer

Simon Fraser University - Linington Lab

Mar 2018 – Present Vancouver, BC

Responsibilities include:

  • Data acquisition + database management

  • Web and tool based development

  • Analysis

  • Deployments

  • External projects:

    • metabolomics pipelines
    • web servers
    • LIMS system
 
 
 
 
 

Sessional Instructor

Thompson River University

Oct 2017 – Dec 2017 Kamloops, BC
Taught advanced physical chemistry.

Accomplish­ments

Introduction to Databases in Python

See certificate

Intro to SQL for Data Science Course

See certificate

Convolutional Neural Networks

See certificate

Improving Deep Neural Networks: Hyperparameter tuning, Regularization and Optimization

See certificate

Structing Machine Learning Projects

See certificate

Neural Networks and Deep Learning

See certificate

Recent Posts

Projects

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Linington Lab DB

Linington Lab LIMS.

MADByTE

Metabolomics and Dereplication By Two-Dimensional Experiments Using 2D NMR to streamline Natural Product Research.

NP Analyst

NP Analyst pipeline for rapid hit-to-lead development with metabolomics and bio-assay data.

NP Atlas

The Natural Products Atlas.

Recent & Upcoming Talks

Recent Publications

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